Publications

• Ewald J., Zhou, G., Lu, Y., Kolic, J., Ellis, C., Johnson, J.D., Macdonald P.E. and Xia, J. (2024) Web-based multi-omics integration using the Analyst software suite Nature Protocols 19, 1467–1497
• Ewald J., Zhou, G., Lu, Y., and Xia, J. (2023) Using ExpressAnalyst for comprehensive gene expression analysis in model and non-model organisms Current Protocols 3 (11), e922
• Liu, P., Ewald J., Legrand E., Jeon, Y.S., Sangiovanni, J., Hacariz, O., Pang, Z., Zhou, G., Head, J., Basu, N., and Xia, J. (2023) ExpressAnalyst: a unified platform for RNA-sequencing analysis in non-model species Nature Communications 14, 2995
• Liu, P., Ewald, J., Galvez, J. H., Head, J., Crump, D., Bourque, G., Basu, N., and Xia, J. (2021) Ultrafast functional profiling of RNA-seq data for nonmodel organisms Genome Research 31, 713-720
• Ewald, J., Soufan, O., Soufan, O. Xia, J.@ and Basu, N.(2020) FastBMD: an online tool for rapid benchmark dose-response analysis of transcriptomics data Bioinformatics 37, 1035–1036
• Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019) NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis Nucleic Acids Research 47, 234-241
• Xia, J., Gill, E., and Hancock, R.E.W. (2015) NetworkAnalyst for Statistical, Visual and Network-based Approaches for Meta-analysis of Expression Data Nature Protocols 10, 823-844.
• Xia, J., Benner, M.J. and Hancock, REW. (2014) NetworkAnalyst – integrative approaches for protein-protein interaction network analysis and visual exploration Nucleic Acid Research, 42, 167-174
• Xia, J., Fjell, C.D., Mayer, M., Pena, O.M., Wishart, D.S. and Hancock, R.E.W. (2013) INMEX – a web-based tool for integrative meta-analysis of expression data Nucleic Acids Research, 41, 63-70
• Xia, J., Lyle, N.H., Mayer, M., Pena, O.M. and Hancock, R.E.W. (2013) INVEX – a web-based tool for integrative visualization of expression data Bioinformatics, 29, 3232-3234